Five year term study from 2002 to 2006 was carried out to examine the effects of continuous long-term application of swine liquid manure on soil chemical properties including heavy metal contents and yield of tomato (Lycopersicon esculentum) and cucumber (Cucumis sativus L.) in a greenhouse. Treatments were conventional chemical fertilizers and three types of swine slurry; Slurry composting and biofiltration (SCB), Thermophilic aerobic oxidation (TAO), and Bio-mineral water (BMW). Total nitrogen level of the SCB, TAO, and BMW was 0.47%, 0.09%, and less than 0.01%, respectively. The heavy metal contents of the three liquid manures were much lower than the Korean regulation level. The soil phosphorus, potassium, and heavy metal contents after five year continuous application of swine slurry were not significantly higher than those of chemical fertilizer use. Contents of heavy metals in leaves of the crops did not show significant difference among treatments. The levels of copper and zinc, plant essential elements, in leaves were in the range of optimum plant growth. Yields of tomato and cucumber for swine liquid manures were not significantly different from that of chemical fertilizer. The results implied that the three types of swine slurry may not deteriorate soil chemical properties including phosphate and trace elements in greenhouse soils when they are applied as a basal fertilization at a recommended nitrogen rate based on soil testing.