Fertilizers, plant growth promoting microbes and plant growth regulators should be combined together and used in order to achieve a maximal plant growth and yield in modern sustainable and ecological agricultural systems. In this study rhizosphere inoculation of Methylobacterium oryzae CBMB20 and foliar application of methanol were tested for their ability to promote the growth of red pepper plant at different levels of organic fertilizer. Rhizosphere inoculation of M. oryzae CBMB20 and foliar spray of methanol could promote red pepper plant growth and yield, and the growth promoting effect induced by the combined treatment of M. oryzae CBMB20 inoculation and foliar spray of methanol was more distinctive. This result suggests that a synergistic growth promoting effect of methanol spray and M. oryzae CBMB20 inoculation can be obtained in the combined treatment of the two growth promoting factors. The growth promoting effect was more significant in the lower fertilization rate, and the plant growth was not significantly different between 100 and 300% fertilizer treatments where both M. oryzae CBMB20 inoculation and foliar spray of methanol were included. This result indicates that, with the plant growth promoting effect of M. oryzae CBMB20 and methanol, fertilizer application rate can be profoundly reduced without any significant decreases in biomass accumulation and yield of crops.