An analysis tool for predicting transmission loss in high speed trains based on combined use of the statistical energy analysis and the finite element methods has been proposed. The analysis utilizes a commercially available numerical solver VA ONE with imbedded NASTRAN module. The proposed analysis tool is first verified by comparing numerically predicted transmission loss of a light rail transport(LRT) structure with experimental results. The comparison shows that the numerically predicted transmission loss is similar to the experimental data. The analysis tool is then applied to the prediction of transmission loss in the high speed train(HST) currently under development. Various sub-structures such as the floor, side panel and ceiling have been numerically analyzed to predict their transmission losses. The results obtained here can be used as input data for predicting the interior noise level of the HST at design stage.