The renewable resource are getting more attentions with increased concerns on the depletion of fossil fuels and several environmental issues like emission problem. Wind power is a representative option among several renewable sources and the generation capacity using wind power is being increased. However, the wind generation is so volatile on its output characteristic, so it is required to assess the grid impact of wind power generation by measuring the fluctuation effect more precisely. This paper proposes the method for measuring the generation output according to IEC 61400-21(Measurement and assessment of power quality characteristics of grid connected wind turbines) to assess the power quality of wind turbine generation. In addition, it shows an application case to a small-scale wind power generator. In the case study, it suggests a structure design of the proposed measurement instrument both on hardware and software aspects, which is composed of a remote monitoring & data analysis program and an FPGA based real-time signal processing device.