In this study, a newly modified 3-dimensional strain-dependent hydraulic conductivity modification relation which incorporates the influences of normal deformation and shear dilation is suggested. Since rock mass is simulated as a orthogonally jointed medium, an anisotropic hydraulic conductivity field can be evaluated using that relation. The empirical relationship on the basis of GSI and disturbance factor has been used to estimate the value of a modulus reduction ratio (ratio of rock mass deformation modulus to rock matrix elastic modulus). Principal hydraulic conductivity directions is not generally coincident with the global coordinate due to the inclining of joint and the influence of joint inclination is evaluated under strain rotation. Result shows that change of hydraulic conductivity does decreases with the increase of GSI and disturbance factor has much effects on the hydraulic conductivity of rock mass getting GSI value above 50. It is found that the inclination of joint impacts on the variation of hydraulic conductivity.