In order to improve the efficiency of a transformer cooling system, the intelligent algorithm was developed. The intelligent algorithm is composed of a setpoint algorithm and a control algorithm. The setpoint algorithm was developed by the neural network, and the control algorithm was developed by the fuzzy logic. These algorithms were used for the control of a blower and an oil pump of the transformer cooling system. In order to analyse performances of these algorithms, the dynamic model of a transformer cooling system was used. Based on various performance tests, energy savings and stable controls of a transformer cooling system were observed. Therefore, control algorithms developed for this study may be effectively used for the control of a transformer cooling system.