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PromoterWizard: An Integrated Promoter Prediction Program Using Hybrid Methods
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  • PromoterWizard: An Integrated Promoter Prediction Program Using Hybrid Methods
  • PromoterWizard: An Integrated Promoter Prediction Program Using Hybrid Methods
저자명
Park. Kie-Jung,Kim. Ki-Bong
간행물명
Genomics & informatics
권/호정보
2011년|9권 4호|pp.194-196 (3 pages)
발행정보
한국유전체학회
파일정보
정기간행물|ENG|
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이 논문은 한국과학기술정보연구원과 논문 연계를 통해 무료로 제공되는 원문입니다.
서지반출

기타언어초록

Promoter prediction is a very important problem and is closely related to the main problems of bioinformatics such as the construction of gene regulatory networks and gene function annotation. In this context, we developed an integrated promoter prediction program using hybrid methods, PromoterWizard, which can be employed to detect the core promoter region and the transcription start site (TSS) in vertebrate genomic DNA sequences, an issue of obvious importance for genome annotation efforts. PromoterWizard consists of three main modules and two auxiliary modules. The three main modules include CDRM (Composite Dependency Reflecting Model) module, SVM (Support Vector Machine) module, and ICM (Interpolated Context Model) module. The two auxiliary modules are CpG Island Detector and GCPlot that may contribute to improving the predictive accuracy of the three main modules and facilitating human curator to decide on the final annotation.