Numerical analysis of hydrodynamic performance of a movable submerged breakwater was carried out as an eco-friendly marine structure for coastal and harbor protection. Using boundary elements method with two-dimensional frequency-domain reflection and transmission coefficients and wave forces acting on the submerged flat plate were calculated with various submerged depths and respective motion allowable modes. The movable breakwater was found to be more efficient in wave-blocking than the fixed structure. Variation of reflection coefficients was significantly influenced by vertical motion of the body.