The purpose of this paper is to suggest a pilot model of knowledge organizing system which reflects the knowledge structure of research papers, using a case analysis on the "Korean Research Memory" of the National Research Foundation of Korea. In this paper, knowledge structure of the research papers in humanities and social science is described and the function of the "Korean Research Memory" for scholarly sense-making is analysed. In order to suggest the pilot model of the knowledge organizing system, the study also analysed the relation between indexed keyword and knowledge structure of research papers in the Korean Research Memory. As a result, this paper suggests 24 axioms and 11 inference rules for an ontology based on semantic relation of the knowledge structure.