This paper proposes photovoltaic thermal hybrid module to get the electrical and thermal performance of building integrated photovoltaic(BIPV) system. BIPV system is decreased the system efficiency because output of PV is decreased by the thermal rising on generating. In order to improve the efficiency of BIPV module, water cooling system is applied and generated thermal is used the warm water system. Water cooling system uses the flux control algorithm considering water temperature and power loss. Electrical and thermal performance of proposed photovoltaic thermal hybrid module is confirmed through the actual experiment and herby proved the valid of this paper.