The effect of the core cell shape on shock absorption characteristics of biomimetically inspired honeycomb structures has been numerically investigated. The finite element models of honeycomb test specimen composed of five core cells of identical mass have been constructed, and numerical simulations have been run on PAMCRASH. The dimensions of the sides of core cells as well as the angle between the sides have been shown to influence the shock absorption characteristics of the honeycomb structure. The specimen with regular hexagonal core cell shape is found to show the best shock absorbing capacity, and specimen with rectangle-like core cell are found to provide good shock absorbing characteristics.