Last port logistics for the EDI(Electronic Data Interchange) document processing system using a rapid increase in the complaint is handled. However, the existing system in a way that the script processing EDI documents, but the complexity of the script writing and document processing efficiency, lower consumption due to increased demand for processing has not kept up. Therefore, we changed the script in a way how to handle the binary system was designed and implemented. Also used for port logistics has developed 12 types of EDI documents. Accordingly, the document processing speed compared to existing methods are improved twelvefold port logistics system for processing EDI documents are expected to be utilized.