It has been doing to research on novel techniques for structural health monitoring by applying various sensor techniques to measure the deflection in mechanical and civil structures. Several electric-based displacement sensors have many difficulties for using them because of EMI (Electro-Magnetic Interference) noise of many lead-wires when they are installed to many points in the structures. In this paper, it is proposed an affordable intensity-based fiber optic sensor to measure small displacement solving the problems of conventional sensors. In detail, the sensor head was designed on the basis of the principle of bending loss and a basic experiment was performed to obtain the sensitivity, the linearity and the stroke of the sensor. Moreover, a prototype was designed and manufactured to be easily installed to a structure and a real-time control software was also successfully developed to drive the fiber optic sensor system.