In this paper the seismic performance of a flat plate wall system structure was evaluated based on the ATC-63 approach, and the results were compared with those of a wall slab structure having the same size. As analysis model structures, a twelve story flat plate wall structure and a wall slab structure were designed based on the KBC-2009, and their seismic performances and collapse behaviors were evaluated by nonlinear static and incremental dynamic analyses(IDA). It was observed that the flat plate wall structure was designed with smaller amount of reinforced concrete, and showed slightly larger displacement response compared with those of the wall slab structure. The collapse margin ratios of the two structures obtained from the incremental dynamic analyses satisfied the limit states specified in the ATC-63, and the structures turned out to have enough capacity to resist the design level seismic load.