This study is to analyse the hydrological behavior of agricultural reservoir using CAT (Catchment hydrologic cycle Assessment Tool). The CAT is a water cycle analysis model in order to quantitatively assess the characteristics of the short/long-term changes in watershed. It supports the effective design of water cycle improvement facilities by supplementing the strengths and weaknesses of existing conceptual parameter-based lumped hydrologic models and physical parameter-based distributed hydrologic models. The CAT especially supports the analysis of runoff processes in paddy fields and reservoirs. To evaluate the impact of agricultural reservoir operation and irrigation water supply on long-term rainfall-runoff process, the CAT was applied to Idong experimental catchment, operated for research on the rural catchment characteristics and accumulated long term data by hydrological observation equipments since 2000. From the results of the main control points, Idong, Yongdeok and Misan reservoirs, the daily water levels of those points are consistent well with observed water levels, and the Nash-Sutcliffe model efficiencies were 0.32~0.89 (2001~2007) and correlation coefficients were 0.73~0.98.