A reformer for a small fuel cell system is an apparatus which converts hydrocarbon fuel into hydrogen-rich gas. Among many indices of a reformer, the most crucial index of a reformer is CO concentration in the off-gas out of reformer which must be controled under 5ppm for the efficiency and performance of a system. This paper suggests the criteria of a reformer operation for the stability of a reformer in a fuel cell system by deducing crucial indices and improving processes. The six-sigma technique was applied to verify the optimum control and operation of a reformer of a fuel cell combined heat and power system. The result of temperature control of each parts of a reformer system is the concentration of CO which is the most important factor for the operation of a fuel cell system. The temperature of the parts of a reformer, MTS, LTS and Prox, were controled so that the concentration of CO.