The engineering characteristics of natural sediments containing diatom microfossils have been investigated for their abnormal deformation and strength behavior for a few decades. The presence of disk or hollow shape diatoms causes low compressibility, high hydraulic conductivity, and high shear strength of sediments. Some of these unusual differences show the characteristic of diatom owing to the interlocking of large interparticle porosity and angular particles. This phenomenon implies the possible use of diatom as modification materials to change the engineering performance of soil mixtures. This paper describes the engineering characteristics of diatom-kaolin mixture to investigate the engineering properties of diatom modified soils using conventional geotechnical tests and elastic and electromagnetic wave propagation tests. Experimental test results show the performance improvement by increasing diatom contents and the performance degradation by the breakage of interlocking between diatom particles under high effective stress.