The data of the agricultural water quality survey network was analyzed between from 1990 to 2010 in order to propose effective plans for water quality management by analyzing the characteristics of agricultural lakes and the change of water quality. The result of the analysis shows that there is a correlation between water quality and items that can be a function of water depth such as dam height, dam length, dam height/dam length ratio and active storage/surface area of lake ratio. This means that, Korean agricultural lakes, there is a correlation between water quality and water depth. Water quality of the lakes that have lower than 5m of active storage/surface area of lake ratio (effective water depth) especially tends to get worse rapidly. The Chl-a and COD concentration of Korean agricultural lakes have a tendency to increase between June and September. Therefore, we recommend first taking a water quality improvement project for the lakes preformed watershed management project, and taking a preventive short-term water quality improvement project for the unperformed lakes before June among lakes that have lower than 5m of effective water depth.