In this study, molecular size distribution of natural organic matter (NOM) after ozonation was measured and its effect on adsorption capacity of activated carbon was investigated. According to the results, the molecular size of NOM was limitedly changed. Specifically, the molecular size of NOM between 5,000 to 10,000 Da were slightly decreased with increasing ozone doses. The adsorption capacity after ozonation was evaluated using Freundlich isotherm with ideal adsorbed solution theory (IAST) which simulated the multi components adsorption. Further, mini-column test was conducted. The Freundlich constant, K was reduced after ozonation and the non-adsorbable fraction was increased with ozonation. However, no correlation between K and ozone doses was found. The present study also agreed with the correlation between adsorption capacity and pore size characteristics of activated carbon.