In this paper, the Superconductor flywheel energy storage system (SFESS) was used for the load frequency control (LFC) of an interconnected 2 area power system. The robust SFESS controller using quantitative feedback theory (QFT) was designed to improve control performance in spite of parameter uncertainty and unexpected disturbances. An overlapping decomposition method was applied to simplify SFESS controller design for the interconnected 2 area power system. The model for simulation of the interconnected 2 area power system included the reheat steam turbine, governor, boiler dynamics and nonlinearity such as governor deadband and generation rate constraint (GRC). To verify robust performance of proposed SFESS controller, dynamic simulation was performed under various disturbances and parameters variation of power system. The results showed that the proposed SFESS controller was more robust than the conventional method.