Seismic response of single degree of freedom system supported by shallow foundation was analyzed by using nonlinear explicit finite difference element code. Numerical analysis results were verified with dynamic centrifuge test results of the same soil profile and structural dimensions with the numerical analysis model at a centrifugal acceleration of 20 g. Differences between the analysis and the test results induced by the boundary conditions of control points can be reduced by adding additional local damping to the natural born cyclic hysteretic damping of the soil strata. The analysis results show good agreement with the test results in terms of both time histories and response spectra. Thus, it can be concluded that the nonlinear explicit finite difference element code will be a useful technique for estimating seismic residual displacement, earthpressure etc. which are difficult to measure during laboratory tests and real earthquake.