In this study, a remote controller was designed using localization technique. The designed remote controller system consists of infrared transmit/receive module for time synchronization, ultrasonic transmit/receive module for measuring the TOA value, and micro-controller for processing the measured data value. For the position estimation method of remote controller, the Savarese method was used which does not have a problem of diverging solution depending on initial value. The noise included in the measured value was removed by separating the signal and noise with the use of EMD method which is the non-stationary signal analysis technique. The designed system was tested by constructing a simulation environment, and the improvement of accuracy and precision for the application of EMD method was examined.