The movement patterns of fish aggregations swimming freely near artificial reefs on August 24, 2006, at Suyeong Man, Busan, Korea, were acoustically investigated and analyzed. Acoustic surveys were conducted using a 70kHz split-beam echo sounder, 330 kHz side-scan sonar and a 310 kHz imaging sonar. Algorithms for tracking the movement of fish aggregations swimming in response to artificial reefs were developed. The travel direction and the swimming speed for two aggregations of fish were estimated from the trajectory orientations of echo responses recorded by the imaging sonar.The first group was floating just above the reef structure, while remaining in the midwater column, and the second group was swimming through and around artificial reefs near the seabed. The mean swimming speed was estimated to be 0.40 m/s for the midwater fish aggregation and 0.17 m/s for the bottom aggregation close to artificial reefs. These results suggest that the swimming behavior of fish aggregations passing close to artificial reefs near the seabed displayed a slower moving pattern than fish floating just above the reef structure in the midwater column.