The delay times due to the propagating of data on PCB depend on the shape and length of interconnection lines when memory controllers and high speed memories are soldered on the PCB. The dependency on the placement and routing on the PCB requires redesign of I/O logic or reconfiguration of the memory controller after the delay time is measured if the controller is programmable. In this paper, we propose architecture of configuring logic for the delay time estimation by writing and reading test patterns while initializing the memories. The configuration logic writes test patterns to the memory and reads them by changing timing until the correct patterns are read. The timing information is stored and the configuration logic configures the memory controller at the end of initialization. The proposed method enables easy design of systems using PCB by solving the problem of the mismatching caused by the variation of placement and routing of components including memories and memory controllers. The proposed method can be applied to high speed SRAM, DRAM, and flash memory.