Nowadays, function related to anti-vibration and anti-shock of storage devices is required because of portability. Therefore, many hard disk drive (HDD) studies about external shock and vibration have been performed. Especially, many studies are performed with non-operational shock. Most studies have used the fixed condition between spindle system and base when they wanted to analyze dynamic behavior of inner parts in simulation. But spindle system has actually stiffness and damping coefficient. Maybe difference of value would be happened between fixed condition and spring condition. So, we measured FRF of spindle system to know stiffness and damping coefficient in HDD. And we studied on dynamic behavior of inner parts by using calculated stiffness and damping coefficient. As a result, we confirmed the difference as boundary condition of spindle system.