This paper presents implementation of embedded remote monitoring diagnosis system which has effective wireless channel structure and communication protocols with user-friendly UI for intelligent digital vessel. Developed system contains integrated vessel monitoring system, server, exclusive mobile terminal and smart phone. We designed an effective dual structure communication channel and simple but effective communication protocol on the monitoring system. Failures of the wireless communication are minimized and the wrong wireless communication channel is immediately replaced. In addition, we developed an effective embedded Linux UI for LCD. The implemented wireless monitoring system was tested and verified on digital vessel.