For the auto-landing operation of an air vehicle, the possibility of auto-landing operation should be first evaluated by testing the navigation performance through a flight test. In general, navigation performance is tested by analyzing north/east/down (NED) errors relative to reference equipment whose precision is about 8~10 times higher than that of a navigation system. However, to evaluate the auto-landing operation of an air vehicle, whether the air vehicle approaches a glide path aligned with the runway, within a specific error, needs to be examined rather than examining the north/east errors of the navigation system. Therefore, the longitudinal/lateral errors of air vehicle heading need to be analyzed. In this study, a method for analyzing the longitudinal/lateral errors of a navigation system was proposed as the navigation performance test method for evaluating the safety during the auto-landing of an air vehicle. Also, flight tests were performed six times, and the safety of auto-landing was examined by analyzing the performance using the proposed method.