This paper considers the effect of rainfall on non-point source (NPS) pollutant loads. The impact of runoff on the occurrence of NPS pollutants was found to be influenced by rainfall amount, rainfall intensity, and the number of antecedent dry days (ADD), both independently and in combination. The close correlation ($R^2$ = 0.9920) between rainfall and runoff amounts was demonstrated at the study site (a flower farm) over the period between January 2011 and December 2013. The relationships among pollutant levels, runoff, and rainfall was not satisfactory results except for the Biochemical Oxygen Demand ($BOD_5$). The correlation coefficients between $BOD_5$, and both runoff and rainfall, were greater than 0.92. However, the relationships of other pollutants, such as Suspended Solid (SS), Chemical Oxygen Demand ($COD_{Mn}$), Total Nitrogen (TN), and Total Phosphorus (TP), with runoff and rainfall had correlation coefficients of less than 0.70. The roles of rainfall was different from rainfall categories on the occurrence of runoff. Instantaneous rainfall intensity was a principle factor on the occurrence of runoff following light rainfall events (total ${leq}30mm$). For rainfall of intermediate intensity (total precipitation 31-50 mm), the combined effect of both average rainfall intensity and ADD was found to influence runoff generation. We conclude that the control of NPS pollutants with the reflection of the climate change that makes the remarkable effect of amounts and forms on the rainfall and runoff.