The permanent magnet linear synchronous motors facilitate maintenance, for it is structurally simple compare to rotating machine and has lots of advantage such as a precision control, high speed, high thrust and so on. However, it causes an increase of material cost because of structural characteristics that need to arranges the armature on the full length of transportation lines. Thus, in order to resolve this problem, we propose the discontinuous arrangement method of the armature but the edge always exists due to the structure when the armature is arranged discontinuously. Due to this edge, the cogging force is greatly generated and it causes thrust force ripple generating noise, vibration and decline of performance. Therefore, in this paper, we examined the characteristic of end edge according to the skew angle through 3-D numerical analysis using finite element method(FEM) and improved the operation characteristics.