This paper presents the design of Fuzzy PI controller that is used at BESS(Battery Energy Storage System) charging and discharging process for islanded operation in microgrid. Most of the PI controllers have fixed PI gains, but real-time updated gains are applied to PI controller using Fuzzy logic in this paper. The performances of suggested Fuzzy PI controller are simulated by PSCAD/EMTDC. As a result, output characteristics of ESS applied real-time updated gains to PI controller are faster than those of using fixed gains.