IDS(Intrusion Detection System) can be used as a countermeasure for blackhole attacks which cause degrade of transmission performance by causing of malicious intrusion to routing function of networks. In this paper, effects of IDS for transmission performance based on mobility patterns is analyzed for MANET(Mobile Ad-hoc Networks), a suggestion for effective countermeasure is considered. Computer simulation based on NS-2 is used in performance analysis, VoIP(Voice over Internet Protocol) as an application service is chosen for performance measure. MOS(Mean Opinion Score), call connection ratio and end-to-end delay is used as performance parameter.