To study the fluctuations and relationship in climate change, environmental factors and cyanobacteria communities, we investigated Chudong station of the Daechung reservoir. The average annual temperature showed the maximum value ($13.9^{circ}C$) from 1994, showed a gradually increasing pattern from 1969 to 2010 in the Daechung reservoir. The number of days with temperatures over $20^{circ}C$, minimum temperature of the year and average temperature of the winter season patterns also showed a significant increase. The long-time changed in the annual precipitation were not showed a significant variation. The water temperature record comparatively high value in summer, declined in winter. At all period, the phytoplankton were highest biomass in July 2000, and then, showed comparative higher biomass in the summer months. Cyanobacteria taxa were also showed more than 50%. Emergence of cyanobacteria also appeared in November 2007, were prolonged emergence. The dominant genera of taxa were the dominant sphere (Microcystis spp.) until early 2000. After that, the dominant species were the dominant linear (Aphanizomenon spp., Anabaena spp.). Cyanobacteria were the most correlated with water temperature (r = 0.341, p<0.01) and phosphate concentration (r = 0.355, p<0.01).