Programs of energy balance, mode analysis and transient analysis for a liquid rocket engine have been introduced. The analysis methods have been verified through comparison between the present results, and the results of the other program and experimental data. An energy balance analysis is used for engine system design at the early development phase. A mode analysis is used for decision of engine operation conditions and test conditions, and studying deviation of an engine performance. A transient analysis can predict a propellant flow rate, thrust, impulse at transient phase. It is essential to establish a startup/shut down sequence. The analysis programs will be used to develop the engines of KSLV-II.