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Identification of Plant Viruses Infecting Pear Using RNA Sequencing
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  • Identification of Plant Viruses Infecting Pear Using RNA Sequencing
저자명
Nam-Yeon Kim, Hyo-Jeong Lee, Hong-Sup Kim, Su-Heon Lee, Jae-Sun Moon, Rae-Dong Jeong
간행물명
The Plant Pathology Journal KCI
권/호정보
2021년|37권 3호(통권169호)|pp.258-267 (10 pages)
발행정보
한국식물병리학회|한국
파일정보
정기간행물|ENG|
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영문초록

Asian pear (Pyrus pyrifolia) is a widely cultivated and commercially important fruit crop, which is occasion- ally subject to severe economic losses due to latent viral infections. Thus, the aim of the present study was to ex- amine and provide a comprehensive overview of virus populations infecting a major pear cultivar (‘Singo’) in Korea. From June 2017 to October 2019, leaf samples (n = 110) of pear trees from 35 orchards in five major pear-producing regions were collected and subjected to RNA sequencing. Most virus-associated contigs matched the sequences of known viruses, including apple stem grooving virus (ASGV) and apple stem pit- ting virus (ASPV). However, some contigs matched the sequences of apple green crinkle-associated virus and cucumber mosaic virus. In addition, three complete or nearly complete genomes were constructed based on transcriptome data and subjected to phylogenetic anal- yses. Based on the number of virus-associated reads, ASGV and ASPV were identified as the dominant vi- ruses of ‘Singo.’ The present study describes the virome of a major pear cultivar in Korea, and looks into the diversity of viral communities in this cultivar. This study can provide valuable information on the complexity of genetic variability of viruses infecting pear trees.

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Materials and Methods
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Discussion

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