The automatic assembly system of micro optical filter is a key technology in the development of optical modules with high functionality. In order to create such automatic assembly system of optical filter, we have developed the system and program capable of evaluation of $30mum$-thick film optical filter as well as conventional optical filters performances. Moreover, we have carried out the evaluation of optical filter using developed system and program, and we have compared and analyzed them with by conventional hand work. As results, the measured performances based on the present system are more fast, precise and reliable then those of the conventional hand work. In addition to that, the system can apply for various optical collimators and filters