In order to evaluate the thrust of a propulsion system, generally the captive thrust stand is used Based on the applied propulsion system, the various captive ways between thrust stand and the propulsion system are considered. In this paper, the effect of motor deformation generated during firing in horizontal thrust stand on the measured thrust is theoretically derived from classical beam theory. New flexure performance index is defined and estimated on the basis of the thrust measurement error. Its result is good agreement with numerical result of ABAQUS. This study showed that measurement reliability and safety of test can be highly upgraded, in case of two flexure-type captive thrust stand.