As a biofuel source, direct photosynthetic/metabolic biofuel cells (DPBFC) use cyanobacteria whose photosynthesis and metabolization reactions can convert light energy to electricity, In our previous work, we fabricated a prototype micro-DPBFC that could generate a peak current density of $36{mu}A/cm^{2}$ and a maximum power density of $270nW/cm^{2}$. In this study, we improve on the previous results by using carbon micro electromechanical systems (C-MEMS), formed from the pyrolysis of patterned photoresist, to fabricate carbon electrodes of an arbitrary shape and controlled porosity to increase the surface area. With these new C-MEMS electrodes, the maximum power density of the micro-DPBFC was $516nW/cm^{2}$, a performance twice as good as the results of our previous work.