Temperature, salinity, COD, DIN (Dissolved Inorganic Nitrogen), DIP (Dissolved Inorganic Phosphorus), and Chlorophyll ${alpha}$ obtained from the southern coastal waters during the period of 2003 to 2005 were analyzed. Variability in temperature was not found between groups in southern coastal waters, but significantly different depending on sampling sites (p<0.05). The average temperature in 2003 estimated at $18.33^{circ}C$ that was annually increased by 2005 and significantly different based on statistics (p<0.05). Unlikely to temperature, salinity was significantly different depending on sampling sites, as well as monthly variations (p<0.05). Likewise to temperature, the value of salinity was annually increased. COD estimated at the average of $>1.7;mg;l^{-1}$ for three years, indicating optimal water quality. The fluctuations of nutrients were extremely shown in different sampling sites and monthly variations. Chlorophyll a recorded above $2.0{mu}g;l^{-1}$ which was associated with high primary phytoplankton, whereas it showed much fluctuations in temporal and spatial, In particular, Tongyong, Jaranman, Jinjuman, and Samcheonpo located in the southeast were the highest fluctuations in water quality than any other regions. The correlation between salinity/COD and nutrients/chlorophyll a was strongly negative or positive, which was possibly associated with much the introduction of run-off water as well as rainfall in summer.