This study is to evaluate flood inundation and to recommend measures of damage reduction on sediment by concentrated torrential rainfall at Gonjiamcheon Watershed (183.4 $km^2$). Firstly, the SWAT (Soil and Water Assessment Tool) was simulated streamflow and sediment at upstream. Then, we produced a map of floodplain boundary by using HEC-RAS (Hydrologic Engineering Centers River Analysis System) at downstream. The SWAT model was calibrated with 2 years (2008~2009) daily streamflow and validated for another years (2010~2011. 7. 31). The SWAT model was simulated with 3 years (2008~2010) by monthly water quality (Sediment) at Gonjiamcheon water quality station. The streamflow and sediment from SWAT model were input as boundary conditions to HEC-RAS. The results of HEC-RAS indicated that mapping of floodplain boundary was Jiwol and Jiwol 2 district. Additionally, inundation area and depth were assessed and applied BMPs scenario for managing the sediment yield.