In this study, was proposed a numerical scheme imposing exact solutions as the internal boundary conditions for the shallow-water flows over a discontinuous transverse structure such as a step. The HLLL approximate Riemann solver with the MUSCL was used for the test of the proposed scheme. Very good agreement was obtained between simulations and exact solutions for various problems of the shallow-water flows over a step. In addition, results by the numerical model showed good agreement with those of dam-break experiments over a step and stepped chute one. Developed model can simulate the shallow-water flows over discontinuous bottom such as a drop structure without additional rating curve or topography smoothing. Given the proper evaluations for the flow resistance by a step and the energy loss by the nappe flow in the future, could be simulated flooding and drying of the shallow-water flows over discontinuous topography such as a weir or the river road with retaining wall.