This study comparatively analyzed the faculty evaluation systems of national universities in Korea. The study focused on main issues in faculty evaluation such as the introduction of discipline- or college-based evaluation, relative portion of education and research, measuring of research quality, and the period of evaluation. The study analyzed the faculty evaluation systems of 19 comprehensive, 7 technical, and 11 pre-service teacher education universities. The results showed the following. As a rule, while a large number of comprehensive and technical universities have faculty evaluation systems which reflect the characteristics of discipline or college, most pre-service teacher education universities do not have them. Almost all the universities do not have quality control systems such as peer review of journal papers for evaluating research performance of faculty members. With respect to research product, a large number of universities give more weight on international journal papers or presentations rather than domestic ones. Regarding the period of faculty evaluation, all the universities except a few reflect individuals' performance or products for one year.